Package: statgenMPP 1.0.2

statgenMPP: QTL Mapping for Multi Parent Populations

For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).

Authors:Wenhao Li [aut], Martin Boer [aut], Bart-Jan van Rossum [aut, cre], Fred van Eeuwijk [ctb]

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5 exports 0.00 score 56 dependencies 8 scripts 288 downloads

Last updated 2 years agofrom:34b9781efb. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:calcIBDMPPcreateGDataMPPkinshipIBDreadRABBITMPPselQTLMPP

Dependencies:agridatclassclassIntclicodetoolscolorspacecrayondata.tableDBIdotCall64e1071fansifarverforeachggplot2gluegridExtragtableisobanditeratorsKernSmoothlabelinglatticelifecycleLMMsolvermagrittrmapsMASSMatrixmgcvmunsellnlmepillarpkgconfigproxyR6RColorBrewerRcppRcppArmadilloRcppProgressrlangs2scalessfsommerspamstatgenGWASstatgenIBDstringitibbleunitsutf8vctrsviridisLitewithrwk